Friday, 16 May 2008

Automatic chemical shift calibration of 2D NMR spectra

Accurate calibration of the chemical shift scales of NMR spectra is very important for both reproducibility and the correlation of the chemical shift with structural properties. Usually, this task is very easy in 1D NMR and in general, it is carried out graphically by simply selecting with the mouse cursor a reference signal (e.g. TMS or a residual solvent peak).

In the case of 2D NMR, this operation is more tedious as it has to be applied to both dimensions. In addition, the low digital resolution typically obtained in 2D NMR (nD in general) spectra makes calibration more sensitive to the actual position of the reference peak selected for referencing.

Wouldn’t it be possible to use the calibration information from the 1D spectra (where the digital resolution is usually >20 times higher than in a 2D spectrum) to automatically reference 2D spectra? In theory, this should be possible (at least with several 2D experiments), but I was surprised when I found that none of the NMR software applications I’m aware of incorporates such capability (if anyone knows a software with this feature, please let me know).

Most of the NMR software packages I know include facilities to manually align the 2D and 1D spectra, that is, to correlate signals of 2D and 1D spectra. However, I was interested in a fully automatic procedure to take advantage of the higher digital resolution of the 1D spectrum to calibrate the 2D spectrum.

After studying this issue in depth, we came out with a new algorithm which works exactly as I wanted: Once the 1D spectrum is properly referenced, the 2D spectrum is automatically calibrated with the information contained in the 1D spectrum.

As always, a picture is worth a thousand words. Consider the following 2D COSY spectrum:

And compare it with the corresponding high resolution 1H-NMR counterpart:

It can be observed that the chemical shift scales of both spectra differ by about 1.5 ppm. If the 1D spectrum is attached to the 2D COSY as an external projection, the result would look something like this:

Application of the newly developed autoalignment algorithm will yield the following result (please note that there is not need to enter any user-defined parameter: it's fully automatic):

The scales of the 2D spectrum have been calibrated by using the information contained in the high resolution 1H spectrum.

It’s important to mention that at present, this algorithm does not work with all 2D spectra. Basically, it works fine in those spectra in which internal projections are compatible, in terms of number of resonances, with the external 1D traces. This would be the case of 2D homonuclear experiments and the proton dimension of HSQC and related spectra, but it will not work in the 13C dimension in these experiments.

This new algorithm has been incorporated into the latest version of Mnova (Mnova 5.2.2). Should you be interested in testing it, just download Mnova and play with it. Any comments, suggestions, bug reports, etc, will be very welcome.


SG said...

I would like to mention that automatic alignment of proton and HSQC spectra is a part of ACD NMR Expert sofware (v11 release).

-Sergey Golotvin.

Carlos Cobas said...

Thanks for letting me know.
When I wrote the blog entry, I checked your web site and didn't find anything specific about *Automatic* alignment.

This is what I could read in your web site:

Improved referencing for 2D NMR spectra

* Click-and-drag referencing for 2D NMR spectra
* Drag from the centre of a 2D NNMR correlation to line up with the 1D curve
* Referencing in the 1D curve is retained